STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16875Glycosyl hydrolase; COG3979 Uncharacterized protein contain chitin-binding domain type 3. (392 aa)    
Predicted Functional Partners:
RAM_16870
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
       0.742
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.668
RAM_01450
COG1321 Mn-dependent transcriptional regulator.
  
    0.619
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.593
NagZ
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
       0.581
RAM_33230
Cell surface-attached carbohydrate-binding protein.
 
 
 0.576
RAM_16865
COG1175 ABC-type sugar transport systems, permease components.
       0.558
RAM_16860
COG0395 ABC-type sugar transport system, permease component.
       0.548
RAM_25455
Hypothetical protein.
  
     0.535
CpbD-3
COG3397 Uncharacterized protein conserved in bacteria.
 
 
 0.531
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.