STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16885Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases. (124 aa)    
Predicted Functional Partners:
RAM_16890
COG0640 Predicted transcriptional regulators; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
     0.929
IlvA
COG1171 Threonine dehydratase.
       0.727
RAM_20680
Hypothetical protein.
 
     0.583
RAM_16895
COG1960 Acyl-CoA dehydrogenases.
       0.552
RAM_16875
Glycosyl hydrolase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
       0.463
RAM_16870
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
       0.441
RAM_18035
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
    0.422
RAM_34260
Hypothetical protein.
  
     0.418
RAM_28845
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.