STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16900LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase. (764 aa)    
Predicted Functional Partners:
RAM_33045
COG3629 DNA-binding transcriptional activator of the SARP family.
    0.650
RAM_35275
COG3629 DNA-binding transcriptional activator of the SARP family.
    0.648
RAM_20070
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.598
RAM_24165
SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    0.582
RAM_22620
SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    0.508
RAM_00840
Two-component system sensor kinase; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
 
 
 0.505
RAM_33105
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.500
RAM_34685
SARP family transcriptional regulator.
    0.472
RAM_24460
COG3629 DNA-binding transcriptional activator of the SARP family.
    0.463
RAM_22295
Two-component system sensor kinase; COG2203 FOG: GAF domain.
 
 
 0.458
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.