STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16940ZIP family zinc transporter. (250 aa)    
Predicted Functional Partners:
TroR-2
COG1321 Mn-dependent transcriptional regulator.
  
  
 0.624
CcdA
COG0785 Cytochrome c biogenesis protein.
  
    0.510
RAM_16935
Hypothetical protein.
       0.508
SodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.507
RAM_15570
COG3546 Mn-containing catalase.
 
   
 0.473
RAM_15845
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.460
RAM_15855
Hypothetical protein.
 
   
 0.458
RAM_06680
COG2375 Siderophore-interacting protein.
   
    0.413
RAM_34115
COG2375 Siderophore-interacting protein.
   
    0.413
RAM_32445
DNA-damage-inducible protein F; COG0534 Na+-driven multidrug efflux pump.
  
 
 0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.