STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16965COG1309 Transcriptional regulator. (213 aa)    
Predicted Functional Partners:
RAM_18290
COG1309 Transcriptional regulator.
  
     0.717
RAM_32960
COG1309 Transcriptional regulator.
  
     0.660
RAM_08910
COG1309 Transcriptional regulator.
  
     0.651
RAM_07305
COG1309 Transcriptional regulator.
  
     0.607
RAM_39910
COG1309 Transcriptional regulator.
  
     0.593
RAM_16970
Hypothetical protein.
       0.550
RpoE-24
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.550
RAM_01980
COG1309 Transcriptional regulator.
  
     0.547
RAM_17010
COG1309 Transcriptional regulator.
  
     0.520
RAM_16960
Esterase.
       0.513
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.