STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17000Hypothetical protein; COG3507 Beta-xylosidase. (1047 aa)    
Predicted Functional Partners:
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
  
 0.695
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
  
     0.651
RAM_37950
Cellulase; COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.607
RAM_38455
Hypothetical protein; COG5520 O-Glycosyl hydrolase.
 
  
 0.573
RAM_20325
COG3533 Uncharacterized protein conserved in bacteria.
   
 0.560
AcpP
COG0236 Acyl carrier protein.
  
     0.558
RAM_01085
Hypothetical protein.
  
   
 0.557
RAM_16780
Hypothetical protein; COG3664 Beta-xylosidase.
 
   
 0.547
RAM_17005
Hypothetical protein; COG3642 Mn2+-dependent serine/threonine protein kinase.
       0.533
RAM_17010
COG1309 Transcriptional regulator.
       0.533
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.