STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17015Hypothetical protein. (331 aa)    
Predicted Functional Partners:
RAM_17010
COG1309 Transcriptional regulator.
 
     0.623
RAM_17005
Hypothetical protein; COG3642 Mn2+-dependent serine/threonine protein kinase.
 
     0.622
RAM_41925
NTPase-like protein; COG1192 ATPases involved in chromosome partitioning.
 
     0.563
RAM_41520
Hypothetical protein.
  
     0.490
RAM_37530
Hypothetical protein.
  
     0.454
RAM_22260
Hypothetical protein.
  
  
 0.439
RAM_30510
Hypothetical protein; COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
  
  
 0.439
RAM_35345
Hypothetical protein.
  
  
 0.439
RAM_20500
3-oxoacyl-(ACP) synthase III.
  
     0.430
RAM_28360
Hypothetical protein; COG4188 Predicted dienelactone hydrolase.
  
     0.430
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.