STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17025Hypothetical protein. (264 aa)    
Predicted Functional Partners:
RAM_07780
COG3669 Alpha-L-fucosidase.
 
     0.787
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
 
     0.784
RAM_17945
Hypothetical protein.
 
   
 0.768
RAM_37925
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.734
RAM_28675
Carbohydrate-binding protein; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.717
RAM_02800
Hypothetical protein.
 
   
 0.701
RAM_17030
Alpha/beta hydrolase; COG0657 Esterase/lipase.
       0.662
RAM_40260
Endoglucanase.
 
   
 0.646
Lnt
COG0815 Apolipoprotein N-acyltransferase.
  
     0.644
RAM_28305
COG2124 Cytochrome P450.
  
     0.641
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.