STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AcsCOG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. (540 aa)    
Predicted Functional Partners:
RAM_42960
salicylyl-CoA 5-hydroxylase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
 0.979
RAM_42955
Endoribonuclease L-PSP; COG0251 Putative translation initiation inhibitor, yjgF family.
 
  
 0.726
RAM_15925
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 0.678
RAM_01075
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 0.598
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
0.568
PaaX-5
PaaX family transcriptional regulator; COG3327 Phenylacetic acid-responsive transcriptional repressor.
 
     0.561
RAM_03725
Fatty acyl-AMP ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 0.551
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.529
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.529
RAM_21285
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 0.525
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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