STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17105Hypothetical protein; COG2508 Regulator of polyketide synthase expression. (415 aa)    
Predicted Functional Partners:
RAM_17135
Hypothetical protein; COG0627 Predicted esterase.
 
     0.539
GalM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.530
Aes-4
Esterase/lipase-like protein.
 
     0.449
RAM_20420
Hypothetical protein; COG0495 Leucyl-tRNA synthetase.
 
     0.446
RAM_05615
Hypothetical protein; COG2887 RecB family exonuclease.
  
     0.426
RAM_17115
COG0477 Permeases of the major facilitator superfamily.
     
 0.421
RAM_17110
Integral membrane export protein; COG2409 Predicted drug exporters of the RND superfamily.
       0.420
RAM_17095
ABC transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
     
 0.419
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.