STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17110Integral membrane export protein; COG2409 Predicted drug exporters of the RND superfamily. (666 aa)    
Predicted Functional Partners:
RAM_17115
COG0477 Permeases of the major facilitator superfamily.
  
   0.786
RAM_17125
Phenolpthiocerol synthesis type-I polyketide synthase PpsD; COG3321 Polyketide synthase modules and related proteins.
   
 
 0.584
RAM_17120
fatty-acid-CoA ligase FadD; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
   
 
 0.580
RAM_17130
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
  
 0.561
RAM_17135
Hypothetical protein; COG0627 Predicted esterase.
     
 0.551
RAM_22095
COG1846 Transcriptional regulators.
 
    0.481
RAM_17140
Lipase.
       0.422
Aes-4
Esterase/lipase-like protein.
       0.422
RAM_17105
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
       0.420
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.