STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17135Hypothetical protein; COG0627 Predicted esterase. (324 aa)    
Predicted Functional Partners:
RAM_17125
Phenolpthiocerol synthesis type-I polyketide synthase PpsD; COG3321 Polyketide synthase modules and related proteins.
 
   
 0.893
RAM_17120
fatty-acid-CoA ligase FadD; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 
 0.854
RAM_17130
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
  
 0.788
Aes-4
Esterase/lipase-like protein.
 
  
 0.712
RAM_17140
Lipase.
 
  
 0.694
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.627
RAM_43205
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.627
RAM_05945
COG1605 Chorismate mutase.
  
  
 0.563
RAM_17110
Integral membrane export protein; COG2409 Predicted drug exporters of the RND superfamily.
     
 0.551
RAM_35435
Hypothetical protein.
  
     0.540
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.