STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17195COG2070 Dioxygenases related to 2-nitropropane dioxygenase. (351 aa)    
Predicted Functional Partners:
RAM_17190
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 
    0.971
RAM_17185
Coenzyme A transferase; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.968
PaaG-10
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  
 0.902
RAM_17170
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.885
RAM_17175
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.881
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.800
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.800
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.800
fgd
Flavin-dependent oxidoreductase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.
       0.775
GctA
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
  
  
 0.668
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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