STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17255COG1802 Transcriptional regulators. (218 aa)    
Predicted Functional Partners:
RAM_24370
COG2186 Transcriptional regulators.
 
  
 0.778
RAM_01360
COG2186 Transcriptional regulators.
 
  
 0.777
VanR
COG1802 Transcriptional regulators.
  
     0.768
RAM_07680
COG2186 Transcriptional regulators.
 
  
 0.752
PdhR-6
COG2186 Transcriptional regulators.
 
  
 0.750
RAM_19750
COG2186 Transcriptional regulators.
 
  
 0.749
RAM_10965
COG2186 Transcriptional regulators.
 
  
 0.746
RAM_15350
COG1802 Transcriptional regulators.
  
     0.730
RAM_19710
COG2186 Transcriptional regulators.
 
  
 0.729
RAM_17800
COG1802 Transcriptional regulators.
  
     0.709
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.