STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17270TetR family transcriptional regulator. (202 aa)    
Predicted Functional Partners:
RAM_17265
X-Pro dipeptidyl-peptidase; COG2936 Predicted acyl esterases.
       0.779
Adh-3
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
       0.551
RAM_18080
COG1309 Transcriptional regulator.
  
     0.514
RAM_17260
Hypothetical protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
       0.492
RAM_10855
COG1396 Predicted transcriptional regulators.
  
     0.482
RAM_10090
PA14 domain-containing protein; COG3209 Rhs family protein.
  
     0.427
RAM_32720
Hypothetical protein.
 
     0.427
RAM_26415
Hydrolase.
  
     0.425
RAM_18730
Endoglucanase E-like hydrolase; COG2755 Lysophospholipase L1 and related esterases.
  
     0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.