STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adh-3COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (337 aa)    
Predicted Functional Partners:
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
  
 0.687
RAM_17265
X-Pro dipeptidyl-peptidase; COG2936 Predicted acyl esterases.
       0.551
RAM_17270
TetR family transcriptional regulator.
       0.551
BioF
8-amino-7-oxononanoate synthase; COG0156 7-keto-8-aminopelargonate synthetase and related enzymes.
  
  
 0.408
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
 
  
 0.408
Adh-5
COG1064 Zn-dependent alcohol dehydrogenases.
 
 
0.407
Adh-4
COG1064 Zn-dependent alcohol dehydrogenases.
 
 
0.401
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.