STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17290Hypothetical protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. (300 aa)    
Predicted Functional Partners:
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
 
    0.966
RAM_05650
Flavin binding monooxygenase.
 
     0.732
PaaB
Phenylacetic acid degradation protein PaaB; COG3460 Uncharacterized enzyme of phenylacetate metabolism.
  
 
 0.637
RAM_17285
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
       0.518
RAM_17280
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.502
RAM_47210
Hypothetical protein.
  
     0.491
RAM_17300
COG1309 Transcriptional regulator.
       0.463
RAM_22040
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
  
 0.456
RAM_20100
Hypothetical protein.
  
     0.431
RAM_31475
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.431
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.