STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalA-5Alpha-galactosidase. (635 aa)    
Predicted Functional Partners:
RAM_20310
Large protein.
 
     0.611
RAM_15730
COG3669 Alpha-L-fucosidase.
 
   
 0.603
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.601
RAM_16740
COG3669 Alpha-L-fucosidase.
 
   
 0.597
LacZ-7
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.578
RAM_23510
Hypothetical protein.
  
     0.576
RAM_27340
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.551
RAM_17305
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.529
RAM_17310
COG2764 Uncharacterized protein conserved in bacteria.
       0.529
RAM_17315
Hypothetical protein.
       0.529
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.