STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17350Ricin-type beta-trefoil lectin domain-containing protein. (361 aa)    
Predicted Functional Partners:
RAM_05320
Hypothetical protein.
 
     0.719
RAM_26415
Hydrolase.
  
     0.692
RAM_39325
Hypothetical protein.
  
     0.691
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
 
    
0.680
RAM_16735
Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.671
RAM_29855
Transposase IS4 family protein.
  
     0.622
RAM_40235
Carbohydrate-binding protein.
 
   
 0.617
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.601
RAM_17330
COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.582
YjaB
Acetyltransferase.
  
     0.556
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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