STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17365Extracellular neutral protease. (184 aa)    
Predicted Functional Partners:
RAM_45130
Hypothetical protein.
  
     0.685
RAM_15340
Hypothetical protein.
  
     0.604
RAM_24470
SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
   0.557
RAM_39810
Hypothetical protein.
  
 
 0.539
RAM_31345
Tripeptidyl aminopeptidase.
  
     0.530
RAM_16085
ABC transporter substrate-binding protein.
  
     0.503
SmvA-2
COG0477 Permeases of the major facilitator superfamily.
   
   0.495
RAM_14040
Hypothetical protein.
  
 
 
 0.485
RAM_43670
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
  
 
   0.484
RAM_17370
COG1309 Transcriptional regulator.
       0.476
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.