STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17400Beta-mannosidase; COG3250 Beta-galactosidase/beta-glucuronidase. (939 aa)    
Predicted Functional Partners:
RAM_17395
COG0531 Amino acid transporters.
 
   
 0.817
Glk-2
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
     
 0.780
RAM_17980
Hypothetical protein.
  
     0.707
RAM_33040
Hypothetical protein.
  
    0.641
RAM_38425
Hypothetical protein.
  
     0.631
RAM_01315
Hypothetical protein.
  
    0.621
RAM_17390
COG1940 Transcriptional regulator/sugar kinase.
 
   
 0.601
RAM_29530
alpha-L-rhamnosidase.
 
   
 0.585
RAM_17690
Hypothetical protein.
  
     0.545
RAM_29495
alpha-L-rhamnosidase; COG1049 Aconitase B.
 
 
 0.521
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.