STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17435COG4034 Uncharacterized protein conserved in archaea. (328 aa)    
Predicted Functional Partners:
RAM_17440
COG3145 Alkylated DNA repair protein.
       0.752
RAM_02525
Hypothetical protein.
  
     0.637
RAM_17980
Hypothetical protein.
  
     0.612
RAM_19825
Phthalate 4,5-dioxygenase; COG2258 Uncharacterized protein conserved in bacteria.
  
     0.595
RAM_22760
Glycosyl hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
  
     0.586
RAM_17445
Hypothetical protein; COG0262 Dihydrofolate reductase.
       0.552
RAM_19160
Hypothetical protein.
  
     0.550
RAM_21020
Glycogen debranching enzyme.
  
     0.538
RAM_25460
ATP/GTP-binding protein; COG0714 MoxR-like ATPases.
  
     0.517
RAM_25455
Hypothetical protein.
  
     0.512
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.