STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17440COG3145 Alkylated DNA repair protein. (208 aa)    
Predicted Functional Partners:
RAM_17435
COG4034 Uncharacterized protein conserved in archaea.
       0.752
RAM_17445
Hypothetical protein; COG0262 Dihydrofolate reductase.
       0.566
ApbA
2-dehydropantoate 2-reductase; COG1893 Ketopantoate reductase.
   
    0.475
RAM_28315
Hypothetical protein; COG1893 Ketopantoate reductase.
   
    0.475
RAM_33010
COG1893 Ketopantoate reductase.
   
    0.475
ApbA-2
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.475
RAM_02335
Hypothetical protein.
  
     0.450
RAM_41590
COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins.
  
    0.415
RAM_22210
4-hydroxyphenylpyruvate dioxygenase; COG1082 Sugar phosphate isomerases/epimerases.
  
    0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.