STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17465Hypothetical protein. (130 aa)    
Predicted Functional Partners:
RAM_17460
COG0564 Pseudouridylate synthases, 23S RNA-specific.
       0.715
RAM_41390
Hypothetical protein.
  
     0.680
RAM_17455
Hypothetical protein; COG3548 Predicted integral membrane protein.
 
     0.649
RAM_32525
Hypothetical protein.
  
     0.598
RAM_17470
COG1846 Transcriptional regulators.
  
    0.590
RAM_10330
Hypothetical protein.
  
     0.583
RAM_23015
COG3599 Cell division initiation protein.
 
     0.540
RAM_45310
Hypothetical protein.
  
     0.514
RAM_00185
Hypothetical protein.
  
     0.504
RAM_44530
Hypothetical protein.
  
     0.500
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.