STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17480Hypothetical protein. (261 aa)    
Predicted Functional Partners:
RAM_08075
Hypothetical protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
     0.712
RAM_35535
Hypothetical protein; COG0381 UDP-N-acetylglucosamine 2-epimerase.
  
    0.696
RAM_18490
Polymorphic outer membrane protein.
 
   0.663
RAM_40600
Hypothetical protein.
  
     0.647
RAM_21090
Hypothetical protein.
  
 
 0.633
RAM_31475
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
 
     0.631
RAM_27425
COG4249 Uncharacterized protein containing caspase domain.
  
 0.575
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.573
RAM_11750
Hypothetical protein.
  
 0.565
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.559
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.