STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17515COG3485 Protocatechuate 3,4-dioxygenase beta subunit. (285 aa)    
Predicted Functional Partners:
RAM_12060
Hypothetical protein.
  
     0.573
PcaG
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.560
RAM_17510
Hypothetical protein.
       0.508
PcaH
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.483
PcaB
3-carboxy-cis,cis-muconate cycloisomerase; COG0015 Adenylosuccinate lyase.
 
  
 0.474
RAM_17505
COG1695 Predicted transcriptional regulators.
       0.459
RAM_26250
Hypothetical protein.
  
     0.420
Pel-2
Pectate lyase.
  
     0.414
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.