STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17545Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases. (748 aa)    
Predicted Functional Partners:
RAM_41715
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.704
RAM_24525
Hypothetical protein.
 
    0.616
RAM_41710
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.596
RAM_41625
Hypothetical protein.
  
     0.493
RAM_40595
Hypothetical protein.
  
     0.474
RAM_02815
Exopolysaccharide biosynthesis protein.
 
     0.462
RAM_30690
Hemolysin-type calcium-binding protein.
 
  
 0.462
RAM_34800
Hypothetical protein.
 
   
 0.462
RAM_31450
Hypothetical protein.
 
     0.459
RAM_34760
COG3828 Uncharacterized protein conserved in bacteria.
    
 0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.