STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17575COG1309 Transcriptional regulator. (213 aa)    
Predicted Functional Partners:
RAM_27380
Hypothetical protein.
  
     0.515
RAM_17565
Hypothetical protein.
       0.462
RAM_17570
Hypothetical protein.
       0.462
RAM_08225
COG1546 Uncharacterized protein (competence- and mitomycin-induced).
  
     0.460
AmpC-2
COG1680 Beta-lactamase class C and other penicillin binding proteins.
 
     0.441
RAM_17610
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.440
RAM_28515
Hypothetical protein.
  
     0.428
RAM_00105
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.418
RAM_23940
COG1309 Transcriptional regulator.
  
     0.417
RAM_17580
D-glutamate deacylase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
       0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.