STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17580D-glutamate deacylase; COG0044 Dihydroorotase and related cyclic amidohydrolases. (490 aa)    
Predicted Functional Partners:
RAM_17585
Glutamate carboxypeptidase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
  
 0.941
RAM_17610
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.841
AmpC-2
COG1680 Beta-lactamase class C and other penicillin binding proteins.
 
     0.829
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
 
   
 0.823
RAM_17590
Hypothetical protein.
 
     0.816
RAM_17630
Beta-lactamase/prolyl oligopeptidase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
     0.803
RAM_17605
Hypothetical protein; COG2367 Beta-lactamase class A.
 
     0.774
RAM_17620
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.723
RAM_17615
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.705
RAM_22770
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
 
     0.666
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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