STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CpbD-2COG3397 Uncharacterized protein conserved in bacteria. (170 aa)    
Predicted Functional Partners:
RAM_05265
Endochitinase; COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.613
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.606
RAM_12545
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
   
 0.589
RAM_25705
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
  
 0.588
RAM_38640
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
   
 0.568
RAM_07880
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.551
RAM_01400
COG3325 Chitinase.
   
 0.537
CpbD
COG3397 Uncharacterized protein conserved in bacteria.
  
   
 0.532
RAM_17680
COG1396 Predicted transcriptional regulators.
       0.509
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
  
 0.470
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.