STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17710Ribokinase-like protein; COG0524 Sugar kinases, ribokinase family. (317 aa)    
Predicted Functional Partners:
FucA
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.820
RAM_17705
COG1231 Monoamine oxidase.
  
  
 0.789
RAM_17700
Hypothetical protein; COG2867 Oligoketide cyclase/lipid transport protein.
       0.768
RAM_46135
COG0524 Sugar kinases, ribokinase family.
  
     0.529
RAM_17720
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
       0.521
RAM_17725
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
       0.521
IolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.519
hisA
COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase.
  
  
 0.507
RAM_17730
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.505
IolB
5-deoxy-glucuronate isomerase; COG3718 Uncharacterized enzyme involved in inositol metabolism.
  
  
 0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.