STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17710Ribokinase-like protein; COG0524 Sugar kinases, ribokinase family. (317 aa)    
Predicted Functional Partners:
FucA
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.812
RAM_17705
COG1231 Monoamine oxidase.
  
  
 0.786
RAM_17700
Hypothetical protein; COG2867 Oligoketide cyclase/lipid transport protein.
       0.768
RAM_46135
COG0524 Sugar kinases, ribokinase family.
  
     0.529
RAM_17720
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
       0.521
RAM_17725
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
       0.521
RAM_17730
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.505
RAM_17695
Hypothetical protein.
       0.495
hisA
COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase.
  
    0.479
RAM_15710
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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