STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17735Permease; COG0701 Predicted permeases. (333 aa)    
Predicted Functional Partners:
RAM_17740
COG3689 Predicted membrane protein.
 
  
 0.966
RAM_33920
COG3689 Predicted membrane protein.
 
  
 0.860
RAM_17730
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.526
RAM_17720
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
  
    0.522
RAM_17725
Small multidrug resistance protein, SMR family; COG2076 Membrane transporters of cations and cationic drugs.
  
    0.522
CotA
COG2132 Putative multicopper oxidases.
  
  
 0.419
CotA-2
COG2132 Putative multicopper oxidases.
  
  
 0.419
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.403
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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