STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17750LuxR family transcriptional regulator; COG3899 Predicted ATPase. (943 aa)    
Predicted Functional Partners:
RAM_18490
Polymorphic outer membrane protein.
 
     0.631
RAM_31160
Hypothetical protein.
  
    0.627
RAM_21115
Hypothetical protein.
  
     0.608
RAM_14785
Hypothetical protein.
  
     0.568
RAM_42940
Hypothetical protein; COG2124 Cytochrome P450.
  
    0.551
RAM_18160
Hypothetical protein; COG2319 FOG: WD40 repeat.
 
     0.505
RAM_24525
Hypothetical protein.
  
     0.502
RAM_28815
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
 
 
0.501
RAM_18165
Hypothetical protein.
  
     0.493
RAM_11750
Hypothetical protein.
 
     0.486
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.