STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17810Hypothetical protein. (190 aa)    
Predicted Functional Partners:
RAM_17805
COG1881 Phospholipid-binding protein.
       0.570
RAM_21100
ATPase; COG2205 Osmosensitive K+ channel histidine kinase.
  
     0.563
CooC
Putative ATP-binding protein; COG3640 CO dehydrogenase maturation factor.
  
     0.514
RAM_04685
Hypothetical protein.
  
     0.513
RpoE-55
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
 
     0.507
RAM_34055
Protease inhibitor protein; Belongs to the protease inhibitor I16 (SSI) family.
  
   
 0.489
RAM_22385
Hypothetical protein; COG3568 Metal-dependent hydrolase.
  
   
 0.421
RAM_00205
Hypothetical protein.
  
     0.418
RAM_37295
Hypothetical protein; COG1874 Beta-galactosidase.
  
     0.417
RAM_17800
COG1802 Transcriptional regulators.
  
    0.406
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.