STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17810Hypothetical protein. (190 aa)    
Predicted Functional Partners:
RAM_34055
Protease inhibitor protein; Belongs to the protease inhibitor I16 (SSI) family.
  
 
 
 0.581
RAM_17805
COG1881 Phospholipid-binding protein.
       0.570
RAM_21100
ATPase; COG2205 Osmosensitive K+ channel histidine kinase.
  
     0.563
CooC
Putative ATP-binding protein; COG3640 CO dehydrogenase maturation factor.
  
     0.514
RAM_04685
Hypothetical protein.
  
     0.513
RpoE-55
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
 
     0.508
RAM_41520
Hypothetical protein.
 
 
   0.472
RAM_22145
COG1472 Beta-glucosidase-related glycosidases.
 
  
 0.427
RAM_00205
Hypothetical protein.
  
     0.418
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.417
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.