STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17840Heavy metal transport/detoxification protein; COG2608 Copper chaperone. (68 aa)    
Predicted Functional Partners:
RAM_17850
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
 
 
 0.918
RAM_17845
Hypothetical protein.
 
   
 0.777
CopA
Copper-translocating P-type ATPase; COG2217 Cation transport ATPase.
 
 
 0.772
RAM_35385
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
 
 
 0.772
CopA-2
Copper-translocating P-type ATPase; COG2217 Cation transport ATPase.
 
 
 0.758
RAM_35380
COG1937 Uncharacterized protein conserved in bacteria.
 
  
 0.549
RAM_17860
Penicillinase repressor; COG3682 Predicted transcriptional regulator.
  
  
 0.473
RAM_33325
Penicillinase repressor; COG3682 Predicted transcriptional regulator.
  
  
 0.473
RAM_17835
LuxR family transcriptional regulator fused with ATPase domain; COG2771 DNA-binding HTH domain-containing proteins.
       0.428
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
  
 
 0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.