STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17845Hypothetical protein. (300 aa)    
Predicted Functional Partners:
RAM_17850
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
  
 0.833
RAM_17840
Heavy metal transport/detoxification protein; COG2608 Copper chaperone.
 
   
 0.777
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.539
RAM_07735
Hypothetical protein.
 
   
 0.473
RAM_01745
Cu(2+)-exporting ATPase; COG2608 Copper chaperone.
 
   
 0.470
RAM_35960
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.460
RifB
COG3321 Polyketide synthase modules and related proteins.
  
 
 0.434
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.416
RAM_40580
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.412
RAM_41930
COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
  
 
 0.412
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.