STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17850Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase. (755 aa)    
Predicted Functional Partners:
RAM_17840
Heavy metal transport/detoxification protein; COG2608 Copper chaperone.
 
 
 0.907
RAM_17845
Hypothetical protein.
   
 0.827
RAM_35390
Metal-binding protein; COG2608 Copper chaperone.
 
 
 0.743
RAM_33485
Metal-binding protein; COG2608 Copper chaperone.
 
 
 0.730
RAM_01745
Cu(2+)-exporting ATPase; COG2608 Copper chaperone.
  
 
 0.625
RAM_35380
COG1937 Uncharacterized protein conserved in bacteria.
 
  
 0.512
RAM_16345
COG0474 Cation transport ATPase.
 
 
0.457
RAM_27865
COG0474 Cation transport ATPase.
 
 
0.440
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
  
    0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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