STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17855Peptidase M48; COG0501 Zn-dependent protease with chaperone function. (309 aa)    
Predicted Functional Partners:
RAM_17860
Penicillinase repressor; COG3682 Predicted transcriptional regulator.
 
    0.956
RAM_33325
Penicillinase repressor; COG3682 Predicted transcriptional regulator.
 
    0.697
RAM_17865
COG3544 Uncharacterized protein conserved in bacteria.
 
     0.635
RAM_35375
CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease.
 
     0.535
RAM_17025
Hypothetical protein.
  
     0.483
RAM_17945
Hypothetical protein.
 
     0.471
RAM_07565
Isoniazid inducible gene protein IniA; COG0699 Predicted GTPases (dynamin-related).
  
  
 0.429
RAM_17870
Hypothetical protein.
       0.426
RAM_27170
Peptidase M41; COG0465 ATP-dependent Zn proteases.
  
 
 0.404
ftsH
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 
 0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.