STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17885Flavodoxin-like protein; COG0655 Multimeric flavodoxin WrbA. (234 aa)    
Predicted Functional Partners:
RAM_17900
Transmembrane anti-sigma factor.
 
     0.814
RpoE-25
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.801
RAM_17890
Na+/H+ antiporter-like protein; COG0475 Kef-type K+ transport systems, membrane components.
       0.773
Dps
COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
  
  
 0.505
RAM_32140
Hypothetical protein.
  
  
 0.467
egtD
Hypothetical protein; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
 
     0.432
RAM_24615
COG1652 Uncharacterized protein containing LysM domain.
   
  
 0.429
RAM_43720
COG1652 Uncharacterized protein containing LysM domain.
   
  
 0.429
RAM_02270
COG2130 Putative NADP-dependent oxidoreductases.
  
    0.412
RAM_17880
Hypothetical protein.
       0.411
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.