STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17915Hypothetical protein. (103 aa)    
Predicted Functional Partners:
RAM_17920
COG1090 Predicted nucleoside-diphosphate sugar epimerase.
  
    0.702
RAM_00305
Penicillin acylase; COG2366 Protein related to penicillin acylase.
  
     0.575
RAM_17910
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
   0.567
RAM_42180
Integral membrane protein.
 
     0.534
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.512
RAM_29910
Hypothetical protein.
  
     0.510
RAM_17925
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
   
   0.503
RAM_27400
COG1309 Transcriptional regulator.
  
     0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.