STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17920COG1090 Predicted nucleoside-diphosphate sugar epimerase. (297 aa)    
Predicted Functional Partners:
RAM_17915
Hypothetical protein.
  
    0.702
RAM_17925
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
       0.527
RAM_17930
Hypothetical protein.
       0.527
RAM_17910
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.463
RAM_06725
Acetyltransferase; COG2388 Predicted acetyltransferase.
  
    0.436
arcA
COG2235 Arginine deiminase.
   
    0.410
RAM_17905
Hypothetical protein.
       0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.