STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbfA-7alpha-N-arabinofuranosidase. (518 aa)    
Predicted Functional Partners:
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.812
RAM_22540
Xylitol oxidase; COG0277 FAD/FMN-containing dehydrogenases.
    
 0.806
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
RAM_16780
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.757
RAM_17690
Hypothetical protein.
 
   
 0.730
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.714
RAM_26415
Hydrolase.
  
   
 0.697
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.687
RAM_46840
1-aminocyclopropane-1-carboxylate oxidase; COG3491 Isopenicillin N synthase and related dioxygenases; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.664
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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