STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17990COG1289 Predicted membrane protein. (715 aa)    
Predicted Functional Partners:
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.614
RAM_17995
COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  
    0.611
RAM_33275
Integral membrane protein.
  
     0.583
RAM_25780
Hypothetical protein; COG1409 Predicted phosphohydrolases.
  
     0.550
RAM_33355
ABC transporter permease.
  
     0.548
RAM_19825
Phthalate 4,5-dioxygenase; COG2258 Uncharacterized protein conserved in bacteria.
 
   
 0.542
RAM_33340
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.526
RAM_07065
Hypothetical protein.
  
     0.516
RAM_09685
Aminoglycoside 6'-N-acetyltransferase; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
    0.459
GlbN-2
Oxygen-binding heme protein; COG2346 Truncated hemoglobins.
  
     0.443
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.