STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18025ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. (404 aa)    
Predicted Functional Partners:
RAM_18020
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.968
RAM_18015
Peptidoglycan binding domain-containing protein; COG0793 Periplasmic protease.
 
     0.949
RAM_43455
Peptidoglycan-binding protein.
 
 
 0.895
RAM_43450
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.868
RAM_02515
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.821
RAM_18010
Hypothetical protein.
       0.791
RAM_02510
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein.
 
 
 0.752
RAM_18005
COG0642 Signal transduction histidine kinase.
 
 
 
 0.736
RAM_43460
Hypothetical protein.
 
     0.680
RAM_18000
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
   
 0.664
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.