STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18075Hypothetical protein. (586 aa)    
Predicted Functional Partners:
RAM_18070
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
    0.756
RAM_21220
COG0439 Biotin carboxylase.
  
  
 0.657
HmgA
COG3508 Homogentisate 1,2-dioxygenase.
  
 
 0.646
RAM_14675
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
  
 0.601
RAM_18080
COG1309 Transcriptional regulator.
       0.533
RAM_14680
acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase.
 
  
 0.530
RAM_14695
COG1309 Transcriptional regulator.
 
     0.513
RAM_14685
COG1960 Acyl-CoA dehydrogenases.
 
  
 0.461
RAM_01280
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.410
RAM_04820
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
  
 0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.