STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18110Hypothetical protein. (148 aa)    
Predicted Functional Partners:
RAM_18115
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
    0.671
RAM_42635
Hypothetical protein.
  
     0.623
RAM_47910
Hypothetical protein.
  
     0.608
RAM_23360
Hypothetical protein; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.567
RAM_01150
Hypothetical protein.
  
     0.535
RAM_44410
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
  
     0.520
RAM_08740
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.494
RAM_35705
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.488
RAM_18120
COG1309 Transcriptional regulator.
       0.451
RAM_42490
Hypothetical protein.
  
     0.444
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.