STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18115AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (296 aa)    
Predicted Functional Partners:
RAM_18110
Hypothetical protein.
 
    0.671
RAM_19720
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.609
RAM_16950
Hypothetical protein.
  
     0.592
RAM_31890
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.591
RAM_18120
COG1309 Transcriptional regulator.
     
 0.584
RAM_11835
Transmembrane protein.
  
     0.507
RAM_32375
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.484
RAM_39860
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.481
RAM_18125
Short-chain dehydrogenase/reductase SDR; COG0300 Short-chain dehydrogenases of various substrate specificities.
       0.421
HcaR
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.