STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18155Hypothetical protein. (436 aa)    
Predicted Functional Partners:
RAM_18160
Hypothetical protein; COG2319 FOG: WD40 repeat.
    
 0.799
RAM_18165
Hypothetical protein.
     
 0.783
RAM_18150
Hypothetical protein.
       0.760
RAM_33850
COG4826 Serine protease inhibitor; Belongs to the serpin family.
    
 0.559
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
       0.455
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.435
RAM_02545
Cytochrome C biogenesis protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
    
 0.414
RAM_45300
Redoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
    
 0.414
RAM_46215
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
    
 0.414
RAM_47200
NHL repeat-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
    
 0.414
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.