STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18155Hypothetical protein. (436 aa)    
Predicted Functional Partners:
RAM_18160
Hypothetical protein; COG2319 FOG: WD40 repeat.
   
 
 0.800
RAM_18165
Hypothetical protein.
     
 0.785
RAM_18150
Hypothetical protein.
       0.761
RAM_33850
COG4826 Serine protease inhibitor; Belongs to the serpin family.
   
 0.637
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
  
    0.505
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.464
RAM_14165
Glucose/sorbosone dehydrogenase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
   
 
 0.408
RAM_17805
COG1881 Phospholipid-binding protein.
   
 
 0.408
RAM_42055
COG2939 Carboxypeptidase C (cathepsin A).
   
 0.408
RAM_47020
COG1881 Phospholipid-binding protein.
   
 
 0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.