STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18165Hypothetical protein. (681 aa)    
Predicted Functional Partners:
RAM_18160
Hypothetical protein; COG2319 FOG: WD40 repeat.
 
     0.948
RAM_18155
Hypothetical protein.
     
 0.785
RAM_32925
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1B family.
  
     0.768
RAM_18150
Hypothetical protein.
       0.754
RAM_28900
Hypothetical protein.
 
     0.685
RAM_00595
COG0438 Glycosyltransferase.
  
     0.607
RAM_00600
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.578
RAM_32760
Hypothetical protein.
  
     0.557
RAM_35170
Hypothetical protein; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
     0.545
RAM_13710
SARP family transcriptional regulator fused with ATPase domain; COG3629 DNA-binding transcriptional activator of the SARP family.
  
     0.534
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.