STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_18195COG3533 Uncharacterized protein conserved in bacteria. (951 aa)    
Predicted Functional Partners:
RAM_01675
Hypothetical protein.
  
     0.611
RAM_30865
Hypothetical protein.
  
     0.577
RAM_18200
Hypothetical protein.
       0.554
RAM_18640
Glycoside hydrolase.
 
     0.549
PrrA
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.547
RAM_18210
COG0642 Signal transduction histidine kinase.
       0.547
RAM_02835
Hypothetical protein.
  
    0.518
RAM_29540
Coagulation factor 5/8 type domain protein.
 
     0.506
RAM_18900
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
     0.496
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
     0.492
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.